NIVIOS BREEDERS GUIDE
This guide serves as an educational resource for breeders and upcoming breeders, offering expert tips, best practices, and essential knowledge to enhance our collective effort and breeding programs.
Acting in the best interest of the breed is crucial. Sharing knowledge and expertise is essential for the overall health of our breed, which is why we have created this guide.
-To encourage and support the collective effort of all breeders in ensuring the well-being and advancement of our unique breed.
Throughout this guide, we encourage you to study and analyze different topics while providing the tools to do so.
TABLE OF CONTENTS
"A document, born from a combination of historical context, practicality,
and breed type"
"Quality and consistency through careful selection, genetic health, and
adherence to breed standards"
"A structurally sound dog with the traits set forth in the standards for
the breed, still needs the willingness to perform"
"This evaluation process is invaluable for breeders in determining which
puppies are most suitable for breeding"
PEDIGREE AND BREEDING STRATEGIES
"The pedigree is a vital tool for identifying the underlying types, structure,
health, and working abilities of your dog and future litters"
"This section brings together the biological principles of reproduction
and mating with practical breeding considerations"
"This guide offers practical advice to support you through the whelping
process and ensure the well-being of both mother and pups"
"Close monitoring can help detect and address any issues early, ensuring
the puppies develop healthily and thrive"
"Prioritizing health ensures that your dogs live long, happy lives and
reduces the risk of passing on genetic conditions"
EXPLORE MORE: RECOMMENDED SITES
THE BREED STANDARD
"BREED TYPE MATTERS. THE BREED STANDARD MATTERS"
Taken from the Australian Shepherd University,
by Nannette Newbury
As a breeder you have to know your breeds standards like the back of your hand. A breed standard serves as a blueprint, encapsulating the essence of a dog breed's ideal form and function. It's a document, born from a combination of historical context, practicality, and breed type.
At its core, a breed standard has to guide breeders, judges, and enthusiasts in maintaining the breed's integrity. It outlines desired physical attributes, unique to the breed, and help preserve the breed's distinctive characteristics over generations.
Beyond aesthetics, our breed standard also prioritize health and functionality, by specifying aspects like skeletal structure, coat texture, and gait, all crucial for the breed's performance in its original role, herding.
FCI
ASCA
AUSTRALIAN SHEPHERD
BREED STANDARD
AUSTRALIAN SHEPHERD
BREED STANDARD
ILLUSTRATED BREED STANDARD
ILLUSTRATED BREED STANDARD
BUT, a written description as a breed standard cannot convey information the same way as an illustration, a video clip or physical and visual assessment, but it is a great place for you to start your journey in understanding our breed.
So study it, analyze it, and memorize it!
In addition to this, you must learn which tasks the breed was expected to perform, and in which conditions. Studying the history of a breed is also essential to understanding the breeds physical structure and movement.
But the most important thing to understand as a breeder is that ALL DOGS HAVE FAULTS. As breeders, we must learn which faults each of our dogs possesses in order to try to correct them in the next generation.
CONSISTENT BREEDING QUALITY
In the following video you will hear about the best practices for maintaining high standards in dog breeding. It focuses on ensuring quality and consistency through careful selection, genetic health, and adherence to breed standards. The symposium features expert breeder Sheree Moses, sharing insights and strategies for achieving these goals, emphasizing the importance of responsible breeding practices to enhance the health and characteristics of future generations.
FORM FOLLOWS FUNCTION
Breeders must pay close attention to all of the physical characteristics that make up a breed, as well as breeding for the correct temperament and willingness to carry out the tasks set before them. A structurally sound dog with the traits set forth in the standards for the breed, still needs the willingness to perform the task set before them. Numerous exceptional performance/working dogs in areas spanning from agility to herding have been poorly conformed in structure and performed well only through their desire to do so. These dogs willingness to work is brilliant, but at what cost to their longevity and wear and tear on their bodies?
The following masterclass is based on the FCI Breed Standard Reference Books by Paula Jean McDermid that are available on Amazon. It visualizes the Breed Standard and the ideal structure that enables these breeds to be highly versatile and explains why faulty traits are a problem.
In the following two articles (Part 2 & 3), Stephanie S. Hedgepath gives you a better understanding of the bare basics in canine skeletal structure.
Article part 2 & 3:
Form Follows Function – Part 2 – Canine Structure and Movement
Form Follows Function – Part 3 – Head, Neck & Spinal Column
Bare in mind that this is the very basics, so to fully understand the breed-specific structure and movement, you would have to delve a little deeper. A place to start is reading Jeanne Joy Hartnagle-Taylor's book Canine Form Follows Function: Separating Fact from Fiction.
Another book by Jeanne Joy Hartnagle-Taylor is The Australian Shepherd Judging Compendium, that provides the reader with breed-specific insight and understanding of why structure and gait are important to its function. Each chapter explains a section of the breed standard followed by a quiz that is used to make the reader think.
The following video takes you through the details of canine movement, observing how different breeds demonstrate efficient and correct gaits while conserving energy. Experts provide insights into what constitutes appropriate and inappropriate movements, emphasizing adherence to breed standards. This content enhances understanding of dogs in motion, essential for both assessing their health and evaluating movement quality.
With a better understanding of the structure and movement of the breed, the next step is being able to visually exam the dog in front of you. To help visualize assessing a standing dog, read the following article (Part 4), by Stephanie S. Hedgepath, followed by reading how to stack the Australian Shepherd, by Nannette Newbury:
Article part 4:
Form Follows Function – Part 4 – Visual Assessment of the Standing Dog
How to stack the Australian Shepherd:
Visually assessing a coated breed can obviously sometimes be hard, but even so, you should have an idea of what you would want to further explore , in the physical exam.
For the physical exam you have to learn how to feel what you can't see and what a good groomer can't hide, the skeletal structure. This requires expertise, which you can only get by acquiring a lot of knowledge and getting your hands on a lot of dogs.
To exercise in how to physically examine a dog, read the following two articles (Part 5 & 6), by Stephanie S. Hedgepath.
Article part 5 & 6:
Form Follows Function – Part 5 – The Hands on Exam
Form Follows Function – Part 6 – The Hands on Exam 2
When evaluating you should get into the habit of listing what you are seeing and feeling, either by saying it out loud or writing it down as you go. This is a great way of keeping records on each of your dogs or when evaluating a litter. You will make note of all of your impressions throughout this entire procedure. Writing it down is best, especially if you are evaluating a litter.
CHOOSING THE RIGHT PUPPY
As a breeder, selecting the best puppy for future breeding is essential for building a stronger lineage, ensuring that each new generation maintains and enhances their qualities. To aid in this selection process, we have created the NiviosEvaluationSchedule© as a tool for evaluating litters, based on The Hastings Approach.
Download the NiviosEvaluationSchedule© here:
We strongly advise against solely conducting evaluations on your own litters, as "kennel blindness" can come into play. Instead, seek an external, impartial party with significant breed knowledge to assess the puppies for you.
Please note that the average points in this Schedule is experience-based. We therefore encourage you to send back a copy of your filled out document to kennelnivios@gmail.com, as this will contribute to refining our collective knowledge, ultimately benefiting future users.
In the following video, Pat and Bob Hastings, who possess extensive experience with over 28 different breeds, guide viewers through assessing the structural quality of puppies, including factors like balance, angulation, and proportion. This evaluation process is invaluable for breeders in determining which puppies are most suitable for breeding.
PEDIGREE AND BREEDING STRATEGIES
Understanding the pedigree helps breeders select the best mating pairs for future generations. This section covers the significance of pedigrees in developing a breeding strategy and how various breeding methods impact the health, structure, and temperament of the breed.
PEDIGREE ANALYSIS
Creating a successful breeding program requires a strategic approach and a deep understanding of pedigrees. The pedigree is a vital tool for identifying the underlying types, structure, health, and working abilities of your dog and future litters. By thoroughly analyzing pedigrees, you can identify both strengths and weaknesses in your breeding stock and help you select mating pairs that will complement each other.
For this, IT'S ESSENTIAL TO CONSIDER BOTH PHENOTYPE AND GENOTYPE. The phenotype refers to the observable characteristics of a dog, such as its appearance, behavior, and health. In contrast, the genotype is the dog's genetic makeup, which influences these observable traits. By searching and understanding the genotypes within your breeding stock, you can better predict and influence the traits of future litters, ensuring the development of desirable characteristics, while continuously updating your breeding strategy based on your analysis and the outcomes of previous litters.
When examining a pedigree, don't limit your research to the direct lineage. It's equally important to investigate the collateral lines, such as the siblings of the parents, to get a comprehensive understanding of the genetic background.
In the following lecture by Dr. Carmen L. Battaglia, you can read about the different approaches to breeding and pedigree analysis:
Tufts' Canine and Feline Breeding and Genetics Conference, 2007 - Pedigree Analysis
Utilizing methods like the Stick Dog Color Chart Pedigree and the Symbols Pedigree can be incredibly beneficial. These charts help with visualizing and tracking inheritance patterns, which is a key aspect of genotypic analysis. By integrating these tools into your breeding strategy, you can make more informed decisions about mating pairs, maintaining the overall health and quality in your breeding program.
BREEDING STRATEGIES
Different breeding strategies impact the health, structure, temperament, and genetic diversity of a breed. Each method has its advantages and risks, and responsible breeders must carefully consider their approach to maintain breed integrity while prioritizing health.
Inbreeding involves mating closely related dogs (e.g., parent-to-offspring or sibling-to-sibling) to solidify desirable traits and maintain consistency. While this method can enhance breed type, it reduces the overall genetic diversity. A high coefficient of inbreeding (COI) can lead to weakened immune systems, and careful pedigree analysis is essential to avoid compounding genetic weaknesses.
Linebreeding is a milder form of inbreeding, focusing on reinforcing specific bloodlines by mating dogs with a shared ancestor several generations back (e.g., grandparent-to-grandchild, cousin-to-cousin). This method aims to maintain desirable traits while reducing the risks associated with direct inbreeding. However, careful pedigree analysis is still essential to avoid compounding genetic weaknesses.
Outcrossing involves breeding two dogs that are genetically unrelated within the breed, usually with no common ancestors in at least four to five generations. This strategy increases genetic diversity and strengthening immune systems. However, it may also introduce unexpected traits or reduce consistency in type and temperament.
Backbreeding involves breeding an offspring back to one of its parents or grandparents to reinforce a specific trait. This method is used selectively to reintroduce desired characteristics but comes with the same risks as inbreeding, including reduced genetic diversity. So, careful pedigree analysis is still essential to avoid compounding genetic weaknesses.
Each breeding strategy should be used with careful genetic planning, health testing, and a clear understanding of long-term breed preservation goals. A responsible breeder balances maintaining type with safeguarding genetic health to ensure a sustainable future for the breed.
REPRODUCTION AND MATING
This section brings together the biological principles of reproduction and mating with practical breeding considerations. It covers the female’s reproductive cycle, hormonal timing, different mating methods and the realities that influence breeding outcomes.
In addition, common myths and misconceptions are addressed to separate assumptions from biology. The goal is not to provide rigid rules, but to support informed, responsible decision making based on knowledge, experience and best practice rather than simplifications or tradition.
1 PROGESTERONE TESTING
Understanding timing and fertility
Progesterone testing is a central tool in responsible breeding, as it allows mating to be planned based on the female’s actual biological stage rather than behaviour or calendar days. The goal is not to reach a specific number, but to understand the progression of progesterone and how it relates to ovulation and egg maturation.
It is important to emphasise that progesterone testing improves the likelihood of correct timing, but it does not eliminate biological variation or guarantee a successful outcome in every cycle.
1.1 PROGESTERONE PROGRESSION DURING HEAT
Progesterone is measured through a blood sample and reported either in ng/ml or nmol/L. It is essential to be aware of which unit is used, as the same value can appear very different depending on the scale. As a general reference, 1 ng/ml corresponds to approximately 3.18 nmol/L.
During the heat cycle, progesterone levels rise gradually and continue to increase even after ovulation has occurred. Ovulation itself does not mean the eggs are immediately capable of being fertilised. Canine eggs require a maturation period of approximately 2 days after ovulation before they become fertile. This is one of the most common reasons breeding’s fail despite apparently correct timing.
1.2 OVULATION, EGG MATURATION AND FERTILE WINDOW
In practical terms, ovulation typically occurs when progesterone reaches around 5 to 7 ng/ml, corresponding to approximately 16 to 22 nmol/L. Many breeders use this range as a reference point and count forward from here rather than relying on calendar days from the start of heat. At this stage, the eggs have been released but are not yet mature.
As progesterone continues to rise, the eggs complete their maturation and the fertile window is reached when progesterone is typically in the range of 10 to 20 ng/ml, corresponding to approximately 32 to 64 nmol/L. This optimal fertile window most often lasts around two to three days, although individual variation does occur.
It is also important to understand that successful fertilisation does not require mating to take place exactly within this window. Canine sperm can survive within the female reproductive tract for several days, under favourable conditions. This means that mating can occur shortly before the eggs are fully mature and still result in pregnancy once the eggs reach fertility.
The table below illustrates the typical relationship between progesterone values and the biological stage of the cycle. Values and timeframes should be understood as general reference points rather than fixed rules.
Progesterone
(ng/ml)
<1
2
3
4
5 - 7
6 - 10
10 - 20
>20
-
Progesterone
(nmol/L)
<3
6 - 7
9 - 10
~13
16 - 22
19 - 32
32 - 64
>64
-
Typical cycle stage
Anoestrus
Proestrus
Proestrus
Late proestrus
Ovulation
Post ovulation
Fertile window
Post fertile phase
-
Practical interpretation
Approx. 4 days until ovulation
Approx. 3 days until ovulation
Approx. 2 days until ovulation
Approx. 1 days until ovulation
Eggs released, not yet fertile
Egg maturation phase
Optimal fertile window
Fertility declining
Frozen / chilled semen insemination commonly performed
Typical phase duration
(relative to ovulation)
-
-
-
-
Ovulation reference point
Approx. 2 days
Approx. 2 days
Begins after fertile window
Approx. 3 - 4 days after ovulation
1.3 INTERPRETING PROGESTERONE RESULTS
In addition to progesterone measurement, a clinical examination with vaginal cytology and vaginoscopy can further increase accuracy when determining the optimal breeding window. This corresponds to a gynecological examination of the female, where the appearance of the vaginal mucosa is assessed and a cytology sample is collected.
Because individual variation is significant, progesterone values should never be interpreted in isolation. Two females may show the same number on the same day of heat while being at very different biological stages. For this reason, serial testing is far more reliable than a single measurement. Observing the rise and speed of progesterone increase over time often provides more useful information than any single value on its own.
Many unsuccessful breedings are incorrectly attributed to the male or semen quality, when the underlying cause is simply that mating occurred before the eggs were mature or after the fertile window had passed. Understanding progesterone dynamics helps avoid these assumptions and allows breeding decisions to be based on biology rather than guesswork.
Progesterone testing does not remove all uncertainty, but when used correctly it significantly increases the likelihood of successful timing and provides a more realistic framework for evaluating breeding outcomes.
2 MATING METHODS
Putting biology into practice
The choice of mating method should always be based on the female’s cycle, correct timing and the practical realities surrounding the breeding. No method can compensate for incorrect timing or disregard for the wellbeing of the dogs involved. Each method has its own strengths, limitations and requirements, which must be understood in order to make responsible breeding decisions.
2.1 NATURAL MATING
Natural mating allows direct interaction between male and female and follows the dogs’ natural reproductive behaviour. When timing is correct and both dogs are comfortable, this method can be effective with minimal technical intervention. The natural lifespan of sperm within the female reproductive tract also provides some flexibility around the fertile window.
A key aspect of natural mating is the experience itself. Breeders should actively aim to make the situation as calm, safe and positive as possible for both dogs. This includes appropriate surroundings, sufficient time and avoiding pressure or haste. When handled responsibly, natural mating can be a positive experience that supports both physical and behavioural wellbeing.
From a practical perspective, natural mating is also the least costly option, as it does not involve semen handling, transport or veterinary procedures.
2.1.1 WHEN NATURAL MATING IS NOT A GOOD OPTION
Behaviour plays a central role in natural mating. Females may clearly communicate refusal even when biologically fertile, and this communication must always be respected. The male’s safety must also be considered, as a stressed or defensive female can cause injury if the situation escalates.
In some situations, gentle physical support of the female may help her remain steady and calm during mating, but only when this can be done safely and without increasing stress. If the female clearly resists, or if the situation cannot be managed calmly and safely, forcing a natural mating is never acceptable. In such cases, artificial insemination is often a better and more responsible alternative than continuing with stressful or unsafe natural mating attempts.
2.2 ARTIFICIAL INSEMINATION
Artificial insemination with fresh semen is often chosen when natural mating is impractical or undesirable despite correct timing. It removes many behavioural and physical challenges while still using semen with a relatively long lifespan.
Fresh semen can also be a suitable solution when logistics or previous unsuccessful natural matings make direct contact difficult, while still allowing insemination to be closely aligned with the female’s cycle.
Although fresh semen offers some flexibility due to longer sperm survival, correct timing remains essential. Insemination should always be planned in relation to progesterone progression and egg maturation.
Fresh semen insemination typically involves veterinary handling and therefore comes with some cost, unless the breeder has the experience and equipment to perform insemination themselves. While more expensive than natural mating, it is generally less costly than chilled or frozen semen solutions.
2.3 CHILLED SEMEN
Chilled semen allows breeding across distance without transporting the dogs. However, semen quality begins to decline immediately after collection, making transport time, handling and storage conditions critical.
Compared to fresh semen, chilled semen has a shorter viable lifespan, which significantly narrows the margin for timing errors. For this reason, insemination with chilled semen is best carried out by, or in close cooperation with, an experienced reproductive veterinarian familiar with timing, handling and contingency planning.
2.3.1 TIMING, LOGISTICS AND RISKS FOR CHILLED SEMEN
Chilled semen is one of the most demanding breeding methods from a logistical perspective. Successful use requires that semen collection, veterinary availability, transport and insemination all align within a very narrow timeframe.
Short notice changes, limited courier options and the inability to ship over weekends can quickly compromise success. Many veterinary clinics also have reduced or no availability during weekends, further increasing risk. Because chilled semen deteriorates continuously during transport, even relatively short delays can have a significant impact on outcome.
It is also important to recognise that failures are not solely related to transport. Errors in coordination, timing, communication or handling at any stage of the process can be just as limiting as shipping delays and may directly affect the final outcome.
Chilled semen is therefore both more complex and more costly than natural mating and fresh semen insemination, as it involves collection, packaging, shipping and coordinated veterinary procedures.
2.4 FROZEN SEMEN
Frozen semen allows long term preservation of genetic material and offers significant planning advantages. Unlike chilled semen, frozen semen can be prepared, stored and delivered well in advance of the breeding.
This removes the need for last minute coordination of collection and transport and allows the breeder to focus timing efforts primarily on the female’s cycle. In complex breeding situations, this can make frozen semen a more predictable option than chilled semen.
While frozen semen is more robust during transport than chilled semen and can tolerate longer shipping times, logistical delays can still disrupt planning and availability.
2.4.1 TIMING AND PROFESSIONAL HANDLING OF FROZEN SEMEN
Once thawed, sperm survival is very short, often measured in hours rather than days. As a result, insemination with frozen semen requires extremely precise timing in relation to ovulation and egg maturation.
For this reason, insemination with frozen semen is strongly recommended to be performed by an experienced reproductive veterinarian. Correct handling, thawing and placement are critical, and frozen semen should not be managed as a routine procedure. Also frozen semen should not be evaluated or compared directly to fresh or chilled semen, as expectations, handling and biological limitations differ fundamentally.
Frozen semen is generally the most expensive breeding option. Costs are associated with collection, freezing, storage, transport and specialised veterinary procedures.
2.5 TRANSPORT RISKS
Logistics play an important role in both chilled and frozen semen breeding, but the level of risk differs between the two.
Chilled semen is particularly vulnerable to transport delays, as semen quality declines continuously from the time of collection. The inability to ship over weekends and reduced veterinary availability during these periods significantly increase risk.
Frozen semen is generally more tolerant of transport delays, but shipping still carries logistical risk. Periods of high parcel volume, particularly in December, should be avoided due to increased likelihood of delays or lost shipments. This also goes for chilled semen.
2.6 CONCLUSION ON MATING METHODS
Natural mating, fresh semen, chilled semen and frozen semen each have a valid place in responsible breeding. The appropriate method should always be chosen based on the female’s cycle, correct timing, logistical realities and consideration for the wellbeing of both dogs.
No method can compensate for incorrect timing, and no single approach fits all situations. Responsible breeding requires flexibility, biological understanding and a willingness to choose the solution that best supports both breeding goals and animal welfare.
3 HERPES VACCINATION
Supporting neonatal protection
Vaccination against canine herpesvirus is worth considering, as the virus is widespread in the dog population and often carried without visible symptoms in adult dogs. In adult females, infection typically causes little to no clinical illness. The primary concern arises in relation to pregnancy and newborn puppies.
Newborn puppies have an immature immune system and limited ability to regulate body temperature. If infected in the first weeks of life, canine herpesvirus can lead to severe illness or puppy loss. Because exposure to the virus is common, absence of symptoms in the female does not exclude risk to the litter.
3.1 TIMING OF VACCINATION
Herpes vaccination is typically administered as part of standard breeding preparation. The purpose of the vaccine is to support the female’s antibody levels during pregnancy so protective antibodies can be passed to the puppies.
The first vaccination is typically given at the start of the fertile window or seven to ten days after mating. The second vaccination is administered one to two weeks before whelping to ensure sufficient antibody transfer to the puppies.
Correct timing is essential. The vaccine is designed to protect puppies during their most vulnerable phase and is not intended as a long term or annual vaccination outside of breeding context.
3.2 PROTECTION AND LIMITATIONS
It is important to understand what the herpes vaccine does and does not do. The vaccine does not prevent the female from being exposed to or carrying the virus, and it does not eliminate the virus from the environment.
Its function is to increase maternal antibody levels so puppies receive passive protection after birth. While vaccination can significantly reduce the risk of herpes related puppy loss, it cannot guarantee protection in all cases and should be viewed as a supportive measure rather than a safeguard.
3.3 RESEARCH AND EVIDENCE
In the following link, you will find a veterinary Master’s thesis by Rikke Wendt Larsen from the University of Copenhagen, which shows that Canine Herpesvirus type 1 may play a significant role in neonatal puppy mortality and highlights the importance of prevention:
Canine herpesvirus-1 infection in neonatal dogs
4 MYTHS ABOUT BREEDING
Separating assumptions from biology
Breeding is often surrounded by long-standing assumptions, traditions and simplified explanations that are passed on without being critically examined. Some of these beliefs may sound logical or be widely repeated, yet they do not accurately reflect reproductive biology or practical breeding experience.
This section addresses common myths about breeding and places them in a biological and practical context. The aim is not to dismiss experience, but to separate assumptions from evidence and to encourage a more informed and realistic understanding of breeding outcomes.
“Dogs that cannot or will not mate are genetically incompatible”
One of the most persistent myths in breeding is the idea that if two dogs do not want to mate or cannot mate successfully, it must be because they are genetically incompatible or “not a good match”.
There is no scientific basis for this assumption. Willingness or ability to mate is influenced by timing, behaviour, experience, stress, environment and physical factors, not by genetic compatibility. Dogs may refuse to mate even when biologically fertile, and successful reproduction can still occur using alternative methods when timing is correct.
“More matings automatically result in larger litters”
Another common misconception is that increasing the number of matings will automatically increase litter size. In reality, litter size is limited by the number of viable eggs available and their successful fertilisation and implantation.
Repeated matings outside the fertile window do not improve outcomes and may instead increase stress for both dogs. Correct timing is far more important than frequency. When timing is wrong, additional matings do not compensate for the underlying biological mismatch.
“The male determines litter size”
Small litters are often attributed to the male, but this view does not reflect reproductive biology. Litter size is primarily determined by the female through ovulation rate, egg quality, timing and uterine conditions.
Even with excellent semen quality, a limited number of eggs will result in a smaller litter. While the male contributes to fertilisation, he does not control how many eggs are released or how many embryos implant successfully.
“Litter size is consistent from cycle to cycle”
It is a myth that a female will produce similar litter sizes in every cycle. Ovulation rate can vary between cycles in the same female, even when health, age and management remain unchanged.
Hormonal variation, subtle physiological differences and timing all influence outcomes. A smaller or larger litter in one cycle does not necessarily predict future results and should not be interpreted as a permanent change in fertility.
5 NBT ON NBT
Myth or fact?
Breeding natural bobtail to natural bobtail is often discussed with strong opinions, but the genetics behind the trait are well described. This section explains the inheritance mechanism of the T-gene mutation, what scientific studies show, and why breeding outcomes can vary in practice.
5.1 BASIC GENETICS BEHIND NATURAL BOBTAIL
Natural bobtail (NBT) is caused by a genetic variation in the T-box transcription factor T gene, which affects tail development during embryogenesis. In breeds where NBT occurs naturally, the trait is inherited and can result in dogs being born with a naturally shortened or absent tail.
The genetics behind NBT are often described in simplified terms, but in practice they involve specific inheritance patterns that influence both expression and reproductive outcomes. Dogs carrying a single copy of the mutation express a natural bobtail of varying length, while embryos inheriting two copies of the mutation do not develop normally.
Expression of the trait can vary, ranging from very short tails to partial tails, and tail length alone does not provide information about the underlying genotype. Understanding that NBT is a genetic trait, not a cosmetic modification, is essential when discussing breeding decisions involving natural bobtails.
5.2 INHERITANCE PATTERN OF THE T-GENE MUTATION
The following table summarises the currently understood inheritance pattern of the natural bobtail mutation and its biological consequences, based on published genetic studies:
Genotype
N/N
N/BT
BT/BT
Description
No T-gene mutation
(Homozygot normal)
One copy of T-gene mutation
(Heterozygot)
Two copies of T-gene mutation
(Homozygot mutation)
Phenotypic outcome
Long tail
Natural bobtail
(variable length)
Not viable
Biological consequence
Normal development
Normal development
Embryonic loss early in development, with very rare cases of severely malformed neonates if carried to term.
N/N are dogs with no T-gene mutation. They develop normally and are born with a long tail.
N/BT are dogs carrying one copy of the T-gene mutation. They develop normally and are born with a natural bobtail, which can vary in length.
BT/BT refers to embryos carrying two copies of the T-gene mutation. These embryos are not viable and are normally lost very early in pregnancy, resulting in no live born puppies with this genotype. In rare documented cases where BT/BT puppies have been carried to term, they have shown severe malformations such as anorectal abnormalities and pronounced spinal defects, and they usually do not survive the neonatal period.
5.3 INHERITANCE OF THE T-GENE IN DIFFERENT BREEDING COMBINATIONS
The following table summarises how the T gene is inherited in different breeding combinations and how these genetic outcomes are reflected in tail phenotype and litter outcomes:
Parental combination
N/N × N/N
N/N × N/BT
N/BT × N/BT
Expected genetic
distributionat conception
100% N/N
Approx. 50% N/N
Approx. 50% N/BT
Approx. 25% N/N
Approx. 50% N/BT
Approx. 25% BT/BT
Expected biological outcome
All puppies are born healthy with long tails
All puppies are born healthy with a combination of long tails and natural bobtails
All puppies are born healthy with a combination of long tails and natural bobtails. BT/BT embryos usually lost early, causing reduced litter size. In very rare cases, malformed homozygous neonates may be born.
Because embryos with two copies of the mutation fail very early in development in most cases, they are not normally seen as affected puppies at birth. Instead, their loss may be reflected in reduced litter size.
5.4 WHAT RESEARCH AND EXPERIENCE SHOW
Research and long-term breeding experience indicate that NBT on NBT combinations require careful consideration, but they are frequently discussed in an overly absolute way. Outcomes are not limited to a single predictable result, and responsible breeders evaluate pairings based on overall health, structure and genetic background rather than tail length alone.
Several studies support the conclusion that the homozygous form of the mutation is primarily embryonically lethal, meaning that most BT/BT embryos are typically lost very early in gestation and never appear as liveborn puppies. However, scientific literature has also documented rare cases where BT/BT puppies have been carried to term. These neonates showed severe malformations including anorectal atresia, spinal defects and failure to thrive, resulting in neonatal death. This pattern supports the interpretation that BT/BT is incompatible with normal development and survival, whether loss occurs before birth or shortly after.
Haworth et al., 2001 – Mammalian Genome
Indrebø et al., 2008 – Journal of Small Animal Practice
Hytönen et al., 2009 – Journal of Heredity
5.5 NBT ON NBT PAIRINGS AND POTENTIAL RISKS
When two natural bobtail dogs are bred together, the discussion often centres on potential risks. These risks are not hypothetical, but they are also not uniform or guaranteed.
In breeds, like the Australian Shepherd, where NBT is caused by a dominant mutation in the T-gene, breeding NBT to NBT increases the probability that some embryos inherit two copies of the gene. When this occurs, embryonic development typically fails at a very early stage. This may result in embryonic loss, resorption or an overall reduction in litter size, rather than the birth of visibly affected puppies.
The genetic consequence is primarily numeric rather than phenotypic at birth, meaning fewer puppies rather than visibly affected puppies. Nevertheless, rare cases of severely malformed homozygous neonates have been reported, all non-viable after birth.
Importantly, surviving puppies (N/N & N/BT) are typically healthy and unaffected. The concern relates to embryo viability and extreme, infrequent congenital defects in homozygous cases.
5.6 WHEN AND WHY RISKS MAY ARISE
Any increased risk associated with NBT on NBT pairings arises during the earliest stages of embryonic development. If an embryo inherits a genetic combination that is incompatible with normal development, it will usually fail to implant or be lost very early in pregnancy.
This means that a female may appear to conceive normally, but later present with a smaller litter than expected. Such outcomes are often misattributed to fertility issues, semen quality or timing, when genetics may be one of several contributing factors.
It is also important to recognise that not all NBT on NBT pairings produce the same results. Genetic background, breed specific factors, overall reproductive health and chance variation all influence outcomes. The rare occurrence of malformed homozygous neonates adds nuance to the discussion, but does not change the fact that the vast majority of BT/BT conceptions fail prior to birth.
5.7 WHY THE TOPIC IS OFTEN MISUNDERSTOOD
NBT on NBT breeding is frequently reduced to simplified rules of “never” or “always,” which does not reflect biological reality. The subject combines genetics, probability and early embryonic development, making it easy to oversimplify.
Differences in breed populations, historical breeding practices and varying levels of genetic understanding further contribute to confusion. As a result, discussions around NBT on NBT are often driven by assumptions or anecdotal conclusions rather than balanced interpretation of genetics and breeding experience.
A nuanced understanding of NBT genetics allows breeders to move beyond myths and approach NBT on NBT pairings with realism. Tail length alone should never be the sole basis for breeding decisions, but neither should the known genetic mechanisms be ignored.
PREGNANCY AND WHELPING
As a breeder, your responsibility extends to caring for your whelping bitch and her newborn puppies. This guide offers practical advice to support you through the whelping process and ensure the well-being of both mother and pups.
DURING PREGNANCY
Nutrition:
Provide a balanced, high-quality diet specifically formulated for pregnant and lactating dogs. Increase food quantity gradually as the pregnancy progresses, particularly in the final third, to support the growing fetuses.
Exercise:
Maintain regular but moderate exercise to keep the bitch in good physical condition. Avoid heavy activities, especially in the later stages of pregnancy.
Health Monitoring:
Regularly monitor the bitch’s health and behavior. Be attentive to any signs of discomfort or unusual symptoms, such as excessive vomiting, lack of appetite, or unusual discharge. Immediate veterinary attention may be required if these occur.
Ultrasounds and X-rays
Schedule ultrasounds and X-rays with your veterinarian to determine the number of puppies and their development. Knowing how many puppies to expect is crucial so that you can recognize if something goes wrong during whelping.
Environment
Create a calm, stress-free environment. Ensure she has a quiet, comfortable space to rest, away from other animals and excessive noise, particularly in the final days of her pregnancy.
Temperature Monitoring
Regularly take the bitch’s temperature in the days leading up to her due date. A drop of 1°C often indicates labor will begin within 24 hours. This drop is due to hormonal changes as her body prepares for labor, known as the dilation stage.
DURING DELIVERY
Whelping Box
Prepare a clean, warm whelping box well in advance. The box should be large enough for the bitch to move around comfortably but enclosed enough to make her feel secure.
Supplies
Have all necessary supplies ready, including clean towels, sterilized scissors, a heating lamp, a nasal aspirator for clearing airways, and puppy boost supplements to provide immediate energy for weak puppies.
Calcium Supplements
Give the bitch calcium supplements after her first contraction and to the last puppy is born. Keep giving calcium the first three days of nursing to prevent calcium deficiency and potential calcium shock.
Observation
Monitor the delivery process closely but avoid unnecessary interference. Be present to assist if needed, especially if complications arise such as prolonged labor or a stuck puppy. After whelping, help the bitch the coming days by ensuring that she does not accidentally lay on her puppies.
Veterinary Assistance
Have your veterinarian's contact information readily available. In cases of dystocia (difficult birth) or other complications, prompt veterinary intervention is crucial.
Rest and Privacy
Give your bitch time to rest and recover during the first three weeks. Avoid letting other dogs into the whelping room or having any visitors to prevent stress. Prioritize her needs over others and your own!
PUPPY CARING
First Aid Course
Consider taking a first aid course for puppies. This will equip you with the knowledge and skills to handle minor emergencies, provide immediate care in case of health issues, and know how to revive stillborn puppies.
Immediate Care
Once the puppies are born, ensure they are breathing properly. Clear any membranes or fluids from their airways using a nasal aspirator, and stimulate them gently to encourage breathing.
Warmth
Keep the puppies warm, as they are unable to regulate their body temperature. Use a heating lamp to provide consistent warmth, but ensure there is a cooler area they can move to if they get too warm.
Nursing
Ensure all puppies start nursing within the first few hours after birth to receive colostrum, which is vital for their immunity.
Weight Tracking
Track the puppies' weight daily for the first two weeks. Consistent weight gain is a crucial indicator of their health. Any significant weight loss or lack of gain should be addressed immediately. To help with this download the Nivios Puppy Tracker.
Socialization and Environmental Training
Early socialization and environmental training are crucial for puppies. Expose them to varied environments, sounds, and gentle handling to foster well-balanced adult dogs. Introduce them to animals, people, and diverse stimuli to enhance adaptability and confidence in various life situations.
Chiropractic Care
Consider taking your puppies to a chiropractor to address any misalignments they may have from birth or early weeks. Given their rapid growth, preventing structural imbalances is crucial. Chiropractic adjustments can ensure proper alignment, promote optimal growth, and support their physical health as they mature.
A Lifetime Commitment
Caring is also ensuring puppies are matched with suitable homes and providing ongoing support to puppy owners. Establish contracts that protect the welfare of the puppies throughout their lives, including rehoming if found necessary.
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NIVIOS PUPPY TRACKERvol.2
The first two weeks of a puppy's life are critical, as they are highly vulnerable to infections, hypothermia, and dehydration. It is important to keep track of them during this period to ensure they are feeding well, gaining weight, and staying warm. Close monitoring can help detect and address any issues early, ensuring the puppies develop healthily and thrive.
The NiviosPuppyTracker© is a comprehensive and visual template designed for breeders to monitor and analyze the early growth stages of their newborn Australian Shepherd puppies, during their critical first two weeks. Its purpose is to provide a systematic approach for recording and evaluating growth patterns, with an emphasis on individual care and early detection of potential health issues.
To access the template, you need to have Microsoft Excel on your device. If you do not possess a valid license for Excel, you can also use Microsoft Office Online for PC or Microsoft Excel Mobile for iOS or Android for free.
Please note that the breed-specific data included in the template is experience-based. We therefore encourage you to send back a copy of your filled out document to kennelnivios@gmail.com, as this will contribute to refining our collective knowledge, ultimately benefiting future users.
We would also welcome any other inputs to further improve the template. Thank you for your contribution.
USER MANUAL
AN EXAMPLE
HEALTH TESTS AND INHERITANCE
Together with addressing the structural needs of the breed, I can't stress enough how important it is to have your dogs health tested before breeding. Prioritizing health ensures that your dogs live long, happy lives and reduces the risk of passing on genetic conditions. Healthy dogs make for healthier puppies, which not only benefits the breed but also enhances the breed's reputation and the joy they bring to their new families.
Always screen for common breed-specific health issues to maintain the breed’s vitality and well-being. This includes various DNA tests, hip and elbow dysplasia screenings, and eye exams as the bare minimum. Also, keep health in mind when choosing to breed on a bitch and when finding a suitable stud.
And remember to BE SELECTIVE WHEN CHOOSING A STUD FOR YOUR BITCH, considering both structural compatibility, ancestry, temperament, health, and DNA.
Herding breeds, such as Australian Shepherds, are known to carry specific genetic health risks that conscientious breeders should address. Responsible testing for genetic conditions is critical, allowing breeders to make informed decisions that help to mitigate potential health issues for future generations. Below are key genetic tests, with a focus on why each is important for the breed:
Multidrug Resistance 1 (MDR1) see Figure 1 and Addendum 1
Australian Shepherds are notably sensitive to certain medications due to the MDR1 gene mutation. This autosomal recessive mutation impacts drug processing, potentially leading to severe reactions if both gene copies are inherited. Dogs with one copy of the gene (carriers) remain unaffected by drug sensitivity but can still pass the mutation on, which makes testing crucial for breeding programs to avoid the risk of drug sensitivity in future generations.
Collie Eye Anomaly (CEA ) see Figure 1
This autosomal recessive eye condition can lead to vision problems, and Australian Shepherds are among the breeds affected. Carriers, with only one copy of the gene, show no symptoms but may pass it to offspring. Breeding decisions, therefore, benefit from knowing if either parent is a carrier to avoid producing puppies with two copies, which would result in affected vision.
Hereditary Cataracts (HSF4 ) see Figure 2
Australian Shepherds often carry a breed-specific HSF4 mutation associated with cataracts. This mutation, unlike some other cataract-related ones, is inherited in an autosomal dominant manner, meaning just one copy can lead to cataract development. However, the condition is incompletely penetrant—some dogs with the gene might not develop cataracts, though most do, and symptoms may vary. Testing helps breeders lower the incidence of cataracts in future litters, but it may not eliminate all cataract cases due to other possible contributing factors.
Progressive Retinal Atrophy (PRA) see Figure 1
PRA leads to gradual blindness and is inherited in an autosomal recessive pattern. Australian Shepherds with two copies of the gene are at risk of developing PRA and becoming blind, while carriers (one copy) are symptom-free. Testing for PRA enables breeders to avoid pairing two carriers, thereby reducing the likelihood of producing affected puppies.
Canine Multifocal Retinopathy (CMR1) see Figure 1
CMR1 affects the retina, causing lesions that impair vision but rarely lead to full blindness. This autosomal recessive disorder only impacts dogs with two copies of the mutated gene; carriers do not display symptoms but can still pass on the trait. Testing for CMR1 helps breeders avoid producing affected puppies.
Degenerative Myelopathy (DM) see Figure 1
DM is a severe neurological condition that causes progressive paralysis. Since it is inherited in an autosomal recessive manner, both parents must carry the gene for their offspring to be affected. Carriers, while healthy themselves, may still pass the mutation on. Testing for DM is essential to ensure that pairs are selected in a way that minimizes the risk of producing affected puppies.
Hyperuricosuria (HUU) see Figure 1
HUU predisposes dogs to urinary stones and requires management to prevent discomfort and health issues. It follows an autosomal recessive pattern, so both parents must carry the gene for puppies to be affected. Carriers show no symptoms but are capable of passing the mutation down. Screening for HUU helps breeders make informed pairings to reduce the risk of this condition.
Neuronal Ceroid Lipofuscinosis (NCL-6) see Figure 1
NCL-6 is a rare but devastating neurological disease that impacts brain function, leading to severe symptoms and early death in affected dogs. This condition is inherited in an autosomal recessive pattern, meaning two copies are necessary for the disease to manifest. Carriers do not show symptoms but can pass on the mutation, so testing can help breeders avoid producing affected offspring.
The following two tables provide a clear overview of the inheritance patterns for the above named genetic diseases. The tables show how genetic conditions are passed down depending on the genotypes of the parents.
FIGURE 1

FIGURE 2

Addendum 1
MEDICATIONS TO AVOID OR USE WITH CAUTION IN DOGS WITH MDR1
Below is a list of medications and their effects on dogs with the MDR1 mutation. These drugs can cause severe adverse reactions, particularly in homozygous (mutant/mutant) dogs, due to impaired drug transport at the blood-brain barrier.
Acepromazine (tranquilizer/pre-anesthetic)
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Causes prolonged and profound sedation.
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Reduce dose by 25% in heterozygous dogs and 30-50% in homozygous dogs.
Butorphanol (analgesic/pre-anesthetic)
- Increases sedation duration.
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Similar dosage adjustments as acepromazine are recommended.
Ivermectin (antiparasitic)
- Safe at heartworm prevention doses (6 µg/kg).
-
Higher doses for mange treatment (300-600 µg/kg) can cause neurotoxicity.
Selamectin, Milbemycin, Moxidectin (antiparasitics)
- Safe at heartworm prevention doses.
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High doses can cause toxicity.
Loperamide (Imodium; antidiarrheal)
-
Causes severe neurological toxicity even at standard doses and should be avoided entirely.
Emodepside (dewormer)
- Approved for dogs in some countries, but can cause neurological toxicity in MDR1-mutated dogs.
Erythromycin (antibiotic)
- Associated with neurological symptoms in affected dogs.
Vincristine, Vinblastine, Doxorubicin (chemotherapy agents)
- Increased risk of bone marrow suppression and gastrointestinal side effects.
- Reduce dose by 25-30% for MDR1-mutated dogs.
Ketoconazole, Levofloxacin, Digoxin, Cimetidine (miscellaneous drugs)
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Should be used with caution as they may exacerbate neurotoxic effects.
LEARN MORE
In the following link, you will find various articles from the Australian Shepherd Health & Genetics Institute, from where you can learn more about the breed-specific health risks and issues to have in mind.
Australian Shepherd Health & Genetics Institute – Articles
EXPLORE MORE: RECOMMENDED SITES
Sites beyond those that have already been linked to throughout this guide, for further reading and resources.
Australian Shepherd University
Delve into a comprehensive hub offering articles, courses, health insights, and breed-specific resources curated for Australian Shepherd enthusiasts by Nannette Newbury.
You can also find this site on facebook as a forum.
Explore in depth discussions on responsible dog breeding, genetics, health, and long term breed preservation through interviews, expert conversations, and educational content. Better Breeder Chronicles offers thoughtful perspectives aimed at improving breeder knowledge and decision making across breeds and regions.
Educational material including books and videos covering Australian Shepherd history, training techniques, health care, and standards.
NZ Dog Judges Association - Training and Education
Access training tools, articles, and educational resources aimed at enhancing knowledge and skills in dog judging, breed standards, and ethical breeding practices.
Gain insights from Paula McDermid's extensive resources on Australian Shepherds, covering breed and breeder history, health and breeding practices.
Faithwalk's old website Quality Aussies offers information and resources dedicated to Australian Shepherds, providing valuable insights for enthusiasts and breeders interested in understanding and caring for this breed.
ProperK9's blog, by Presa Canario breeder Kelly McIntosh, offers a range of articles on topics related to dog breeding, behavior, and health.
This list will be updated as we discover more recommended resources.
Feel free to share any recommendations you have! kennelnivios@gmail.com